[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 129 items for (author: shigematsu & h)

EMDB-38372:
SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Method: single particle / : Ishimaru H, Nishimura M, Shigematsu H, Marini MI, Hasegawa N, Takamiya R, Iwata S, Mori Y

PDB-8xi6:
SARS-CoV-2 Omicron BQ.1.1 Variant Spike Protein Complexed with MO11 Fab
Method: single particle / : Ishimaru H, Nishimura M, Shigematsu H, Marini MI, Hasegawa N, Takamiya R, Iwata S, Mori Y

EMDB-37850:
Cryo-EM structure of native H. thermoluteolus TH-1 GroEL
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37853:
Cryo-EM structure of H. thermoluteolus GroEL-GroES2 football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37862:
Cryo-EM structure of H. thermophilus GroEL-GroES2 asymmetric football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37863:
Cryo-EM structure of H. thermophilus GroEL-GroES bullet complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wu4:
Cryo-EM structure of native H. thermoluteolus TH-1 GroEL
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wuc:
Cryo-EM structure of H. thermoluteolus GroEL-GroES2 football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wuw:
Cryo-EM structure of H. thermophilus GroEL-GroES2 asymmetric football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wux:
Cryo-EM structure of H. thermophilus GroEL-GroES bullet complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-35634:
Wheat 80S ribosome stalled on AUG-Stop boron dependently
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35635:
Wheat 40S ribosome in complex with a tRNAi
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35636:
Wheat 40S ribosome in complex with a tRNAi and eIF2
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35637:
Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35638:
Wheat 80S ribosome pausing on AUG-Stop with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ip8:
Wheat 80S ribosome stalled on AUG-Stop boron dependently
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ip9:
Wheat 40S ribosome in complex with a tRNAi
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ipa:
Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ipb:
Wheat 80S ribosome pausing on AUG-Stop with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35500:
Cryo-EM structure of the gastric proton pump with bound DQ-02
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

EMDB-35501:
Cryo-EM structure of the gastric proton pump with bound DQ-06
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

EMDB-35502:
Cryo-EM structure of the gastric proton pump with bound DQ-18
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

EMDB-36424:
Cryo-EM structure of the gastric proton pump with bound DQ-21
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

PDB-8ijv:
Cryo-EM structure of the gastric proton pump with bound DQ-02
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

PDB-8ijw:
Cryo-EM structure of the gastric proton pump with bound DQ-06
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

PDB-8ijx:
Cryo-EM structure of the gastric proton pump with bound DQ-18
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

PDB-8jmn:
Cryo-EM structure of the gastric proton pump with bound DQ-21
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

EMDB-34412:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M

EMDB-35997:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M

EMDB-35998:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M

EMDB-35999:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M

PDB-8h0i:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M

PDB-8j62:
Cryo-EM structure of APOBEC3G-Vif complex
Method: single particle / : Kouno T, Shibata S, Hyun J, Kim TG, Wolf M

EMDB-34469:
Conformation 1 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y

EMDB-34470:
Conformation 2 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y

EMDB-34488:
Conformation 3 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y

PDB-8h3m:
Conformation 1 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y

PDB-8h3n:
Conformation 2 of SARS-CoV-2 Omicron BA.1 Variant Spike protein complexed with MO1 Fab
Method: single particle / : Ishimaru H, Nishimura M, Sutandhio S, Shigematsu H, Kato K, Hasegawa N, Mori Y

EMDB-32599:
Cryo-EM structure of tetrameric TLR3 in complex with dsRNA (90 bp)
Method: single particle / : Sakaniwa K, Ohto U

PDB-7wm4:
Cryo-EM structure of tetrameric TLR3 in complex with dsRNA (90 bp)
Method: single particle / : Sakaniwa K, Ohto U, Shimizu T

EMDB-33293:
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, apo structure with DMSO
Method: single particle / : Nishida Y, Shigematsu H, Iwamoto T, Takashima S, Shintani Y

EMDB-33294:
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, the structure complexed with an allosteric inhibitor N4
Method: single particle / : Nishida Y, Shigematsu H, Iwamoto T, Takashima S, Shintani Y

PDB-7xmc:
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, apo structure with DMSO
Method: single particle / : Nishida Y, Shigematsu H, Iwamoto T, Takashima S, Shintani Y

PDB-7xmd:
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, the structure complexed with an allosteric inhibitor N4
Method: single particle / : Nishida Y, Shigematsu H, Iwamoto T, Takashima S, Shintani Y

EMDB-31837:
Cryo-EM structure of human NTCP complexed with YN69202Fab
Method: single particle / : Asami J, Shimizu T, Ohto U

EMDB-31838:
Cryo-EM structure of bovine NTCP complexed with YN69202Fab
Method: single particle / : Asami J, Shimizu T, Ohto U

EMDB-31839:
Cryo-EM structure of Rat NTCP complexed with YN69202Fab
Method: single particle / : Asami J, Shimizu T, Ohto U

EMDB-31840:
Cryo-EM structure of human NTCP complexed with YN69202Fab in the presence of myristoylated preS1 peptide
Method: single particle / : Asami J, Shimizu T, Ohto U

EMDB-32759:
Cryo-EM structure of human NTCP (wild-type) complexed with YN69202Fab
Method: single particle / : Asami J, Shimizu T, Ohto U

PDB-7vad:
Cryo-EM structure of human NTCP complexed with YN69202Fab
Method: single particle / : Asami J, Shimizu T, Ohto U

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more